The Chemical and Materials Engineering Department previously included Biomedical Engineering. Faculty publications from that department may be included here.
Submissions from 2024
Simulation data for engineering graphene quantum dot epoxy nanocomposites using molecular dynamics, Prathamesh P. Deshpande and Ozgur Keles
Mechanical behavior of graphene quantum dot epoxy nanocomposites: A molecular dynamics study, Özgür Keleş and Prathamesh P. Deshpande
Clots reveal anomalous elastic behavior of fiber networks, Andrei Zakharov, Myra Awan, Terrence Cheng, Arvind Gopinath, Sang Joon John Lee, Anand K. Ramasubramanian, and Kinjal Dasbiswas
Submissions from 2023
Prospection of Peptide Inhibitors of Thrombin from Diverse Origins Using a Machine Learning Pipeline, Nivedha Balakrishnan, Rahul Katkar, Peter V. Pham, Taylor Downey, Prarthna Kashyap, David C. Anastasiu, and Anand K. Ramasubramanian
Effect of Graphene Quantum Dots on the Mechanical Properties of Bisphenol F-Based Epoxy, Prathamesh P. Deshpande and Ozgur Keles
Study of electron-induced chemical transformations in model resists, Maximillian Mueller, Terry McAfee, Patrick Naulleau, Dahyun Oh, and Oleg Kostko
Hyperbaric treatment of platelets is comparable to cold storage alone over 14 days, Kristin M. Reddoch-Cardenas, Heather F. Pidcoke, Anand K. Ramasubramanian, M. Adam Meledeo, and Andrew P. Cap
Controlling neocortical epileptic seizures using forced temporal spike-time stimulation: an in silico computational study, Joseph Schmalz, Rachel V. Quinarez, Mayuresh V. Kothare, and Gautam Kumar
Softening of PEO-LiTFSI/LLZTO Composite Polymer Electrolytes for Solid-State Batteries under Cyclic Compression, Dan Il Yoon, Nishad Mulay, Jericko Baltazar, Dang Khoa Cao, Valeria Perez, Johanna Nelson Weker, Min Hwan Lee, Robert D. Miller, Dahyun Oh, and Sang Joon John Lee
Submissions from 2022
Physics-informed neural networks for hybrid modeling of lab-scale batch fermentation for β-carotene production using Saccharomyces cerevisiae, Mohammed Saad Faizan Bangi, Katy Kao, and Joseph Sang Il Kwon
Giant Effects of Interlayer Interaction on Valence-Band Splitting in Transition Metal Dichalcogenides, Garrett Benson, Viviane Zurdo Costa, Neal Border, Kentaro Yumigeta, Mark Blei, Sefaattin Tongay, K. Watanabe, T. Taniguchi, Andrew Ichimura, Santosh Kc, Taha Salavati-Fard, Bin Wang, and Akm Newaz
First-Principles Prediction of New 2D p-SiPN: A Wide Bandgap Semiconductor, Shambhu Bhandari Sharma, Issam Qattan, Santosh KC, and Sufian Abedrabbo
Identification of Distinct Characteristics of Antibiofilm Peptides and Prospection of Diverse Sources for Efficacious Sequences, Bipasa Bose, Taylor Downey, Anand K. Ramasubramanian, and David C. Anastasiu
Data Driven Control of Vagus Nerve Stimulation for the Cardiovascular System: An in Silico Computational Study, Andrew Branen, Yuyu Yao, Mayuresh V. Kothare, Babak Mahmoudi, and Gautam Kumar
Fused Deposition Modeling with Induced Vibrations: A Study on the Mechanical Characteristics of Printed Parts, Joseph Dei Rossi, Ozgur Keles, and Vimal Viswanathan
Nicotine Affects Murine Aortic Stiffness and Fatigue Response during Supraphysiological Cycling, Elizabeth Ho, Joscha Mulorz, Jason Wong, Markus U. Wagenhäuser, Philip S. Tsao, Anand K. Ramasubramanian, and Sang Joon John Lee
CONTROL-CORE: A Framework for Simulation and Design of Closed-Loop Peripheral Neuromodulation Control Systems, Pradeeban Kathiravelu, Mark Arnold, Jake Fleischer, Yuyu Yao, Shubham Awasthi, Aviral Kumar Goel, Andrew Branen, Parisa Sarikhani, Gautam Kumar, Mayuresh V. Kothare, and Babak Mahmoudi
A low-cost, high-throughput microfluidic nano-culture platform for functional metagenomics, Manpreet Kaur, Aura Ferreiro, Cheng Yu Hung, Gautam Dantas, and Anand K. Ramasubramanian
Towards the ionizing radiation induced bond dissociation mechanism in oxygen, water, guanine and DNA fragmentation: a density functional theory simulation, Santosh Kc and Ramin Abolfath
Enhancing transcription in Escherichia coli and Pseudomonas putida using bacteriophage lambda anti-terminator protein Q, Jibran A. Khan, Adam M. Guss, and Katy C. Kao
Electronic and magnetic properties of iridium-based novel Heusler alloys, Ramesh Paudel, Santosh KC, Sudeep Adhikari, Jing Chuan Zhu, Sohail Ahmad, Gopi Chandra Kaphle, and Durga Paudyal
The interaction of vortical flows with red cells in venous valve mimics, Zyrina Alura C. Sanchez, Vignesha Vijayananda, Devin M. Virassammy, Liat Rosenfeld, and Anand K. Ramasubramanian
Enhanced optoelectronic and elastic responses in fluorinated penta-BCN, Shambhu Bhandari Sharma, Santosh K. C., and Durga Paudyal
Large Negative Poisson's Ratio and Anisotropic Mechanics in New Penta-PBN Monolayer, Shambhu Bhandari Sharma, Issam A. Qattan, Santosh Kc, and Ahmad M. Alsaad
Effect of raster angle on mechanical properties of 3D printed short carbon fiber reinforced acrylonitrile butadiene styrene, Skhandesh Srinivasan Ganesh Iyer and Ozgur Keles
Effect of Potassium Salts on Biochar Pyrolysis, Yuthapong Wongmat and David R. Wagner
Submissions from 2021
Learning from the Student Experience: Impact of Shelter-in-Place on the Learning Experiences of Engineering Students at SJSU, Patricia R. Backer, Maria Chierichetti, Laura E. Sullivan-Green, and Liat Rosenfeld
Electronic structure and estimation of Curie temperature in Ca2BIrO6(B = Cr, Fe) double perovskites, Shalika Ram Bhandari, Santosh KC, Sarita Lawaju, Ram Kumar Thapa, Gopi Chandra Kaphle, and Madhav Prasad Ghimire
Mapping Vagus Nerve Stimulation Parameters to Cardiac Physiology using Long Short-term Memory Network, Andrew Branen, Yuyu Yao, Mayuresh V. Kothare, Babak Mahmoudi, and Gautam Kumar
A Facile High-Throughput Model of Surface-Independent Staphylococcus aureus Biofilms by Spontaneous Aggregation, Terrence Cheng, Nelson S. Torres, Ping Chen, Anand Srinivasan, Sandra Cardona, Grace C. Lee, Kai P. Leung, Jose L. Lopez-Ribot, and Anand K. Ramasubramanian
Learning from the Voices of Faculty: An Analysis of the Impact of Shelter-in-Place on Faculty at San Jose State University in Spring 2020, Maria Chierichetti, Patricia R. Backer, Laura E. Sullivan-Green, and Liat Rosenfeld
Effect of recycling on the mechanical behavior and structure of additively manufactured acrylonitrile butadiene styrene (ABS), Alex K. Cress, Jimmy Huynh, Eric H. Anderson, Ryan O'neill, Yanika Schneider, and Özgür Keleş
Temperature dependence of field-response mechanisms in 0.4Ba(Zr0.2Ti0.8)O3-0.6(Ba0.7Ca0.3)TiO3, Chris M. Fancher, Özgür Keleṣ, Matthias Ehmke, and Keith J. Bowman
Adaptive laboratory evolution of β-caryophyllene producing Saccharomyces cerevisiae, Avinash Godara and Katy C. Kao
Prediction of elastic stresses in porous materials using fully convolutional networks, Özgür Keleṣ, Yinchuan He, and Birsen Sirkeci-Mergen
Understanding How the Relative Abundance of Candida Species Impacts Transcriptional Regulation in Co-culture Biofilms, Diksha Kool, Katy Kao, and Wendy Lee
Effect of fiber content and fiber orientation on mechanical behavior of fused filament fabricated continuous-glass-fiber-reinforced nylon, Stephanie S. Luke, David Soares, Janaye V. Marshall, James Sheddden, and Özgür Keleş
Effect of Cyclic Compression on Mechanical Behavior of Ceramic-in-Polymer Composite Electrolytes for Lithium-Ion Batteries, Nishad Mulay, Dahyun Oh, Dan Il Yoon, and Sang Joon John Lee
Peri -Adventitial delivery of smooth muscle cells in porous collagen scaffolds for treatment of experimental abdominal aortic aneurysm, Joscha Mulorz, Mahdis Shayan, Caroline Hu, Cynthia Alcazar, Alex H.P. Chan, Mason Briggs, Yan Wen, Ankita P. Walvekar, Anand K. Ramasubramanian, Joshua M. Spin, Bertha Chen, Philip S. Tsao, and Ngan F. Huang
Cold-stored platelets have better preserved contractile function in comparison with room temperature-stored platelets over 21 days, Prajeeda M. Nair, Michael A. Meledeo, Adrienne R. Wells, Xiaowu Wu, James A. Bynum, Kai P. Leung, Bin Liu, Aswathi Cheeniyil, Anand K. Ramasubramanian, John W. Weisel, and Andrew P. Cap
Fibrin prestress due to platelet aggregation and contraction increases clot stiffness, Suyog J. Pathare, Wilson Eng, Sang Joon J. Lee, and Anand K. Ramasubramanian
Cold storage of platelets in platelet additive solution maintains mitochondrial integrity by limiting initiation of apoptosis-mediated pathways, Kristin M. Reddoch-Cardenas, Grant C. Peltier, Tiffani C. Chance, Prajeeda M. Nair, Michael A. Meledeo, Anand K. Ramasubramanian, Andrew P. Cap, and James A. Bynum
Virtual Fluidization Labs to Assist Unit Operations Courses, David R. Wagner and Fanny Huang
Microbe-Assisted Nanocomposite Anodes for Aqueous Li-Ion Batteries, Pei En Weng, Alexander Gooyandeh, Muhammad Tariq, Tianyu Li, Avinash Godara, Jocelyn Valenzuela, Steven Mancini, Samuel Ming Tuk Yeung, Ruth Sosa, David R. Wagner, Rohan Dhall, Nicole Adelstein, Katy Kao, and Dahyun Oh
Submissions from 2020
Surface functionality and formation mechanisms of carbon and graphene quantum dots, Anuja Bokare, Dennis Nordlund, Cynthia Melendrez, Ryan Robinson, Ozgur Keles, Abraham Wolcott, and Folarin Erogbogbo
Prediction of crack propagation along non-uniform raster patterns in AM composites, Brendan P. Croom, Mark Flores, Daniel Rapking, Ozgur Keles, and Julian Degery
Adaptive laboratory evolution for growth coupled microbial production, Avinash Godara and Katy C. Kao
A predictive failure framework for brittle porous materials via machine learning and geometric matching methods, Alp Karakoç and Özgür Keleş
Development of a novel microfluidic approach for rapid and continuous detection of pathogens in food and water samples, Gurpreet Klar, Crystal M. Han, and Liat Rosenfeld
Studying surfactant effects on hydrate crystallization at oil-water interfaces using a low-cost integrated modular peltier device, Hoi Yan Ko, Kevin Dann, and Liat Rosenfeld
Indian engineering education needs a reboot, Claire Komives
Automated Motion Tracking and Data Extraction for Red Blood Cell Biomechanics, Arun Kumar, Brendan R. Schmidt, Zyrina Alura C. Sanchez, Feyza Yazar, Ronald W. Davis, Anand K. Ramasubramanian, and Amit K. Saha
Image-based analysis and simulation of the effect of platelet storage temperature on clot mechanics under uniaxial strain, Sang Joon J. Lee, Dustin M. Nguyen, Harjot S. Grewal, Chaitanya Puligundla, Amit K. Saha, Prajeeda M. Nair, Andrew P. Cap, and Anand K. Ramasubramanian
Predicting the Phase Stability of Multicomponent High-Entropy Compounds, Krishna Chaitanya Pitike, Santosh KC, Markus Eisenbach, Craig A. Bridges, and Valentino R. Cooper
On the elastic anisotropy of the entropy-stabilized oxide (Mg, Co, Ni, Cu, Zn)O compound, Krishna Chaitanya Pitike, Andres E. Marquez-Rossy, Alexis Flores-Betancourt, De Xin Chen, Santosh KC, Valentino R. Cooper, and Edgar Lara-Curzio
Design Considerations and Assays for Hemocompatibility of FDA-Approved Nanoparticles, Amit K. Saha, Min Yi S. Zhen, Folarin Erogbogbo, and Anand K. Ramasubramanian
Data on thermal conductivity and dynamic mechanical properties of graphene quantum dots in epoxy, Joel R. Seibert, Ozgur Keles, Jun Wang, and Folarin Erogbogbo
Self-Assembled Room Temperature Multiferroic BiFeO3-LiFe5O8 Nanocomposites, Yogesh Sharma, Radhe Agarwal, Liam Collins, Qiang Zheng, Anton V. Ievlev, Raphael P. Hermann, Valentino R. Cooper, Santosh KC, Ilia N. Ivanov, Ram S. Katiyar, Sergei V. Kalinin, Ho Nyung Lee, Seungbum Hong, and Thomas Z. Ward
Carbon-Based Artificial SEI Layers for Aqueous Lithium-Ion Battery Anodes, Usha Subramanya, Charleston Chua, Victor Gin He Leong, Ryan Robinson, Gwenlyn Cruz Cabiltes, Prakirti Singh, Bonnie Yip, Anuja Bokare, Folarin Erogbogbo, and Dahyun Oh
Advances in materials design for all-solid-state batteries: From bulk to thin films, Gene Yang, Corey Abraham, Yuxi Ma, Myoungseok Lee, Evan Helfrick, Dahyun Oh, and Dongkyu Lee
Submissions from 2019
Beneficial mutations for carotenoid production identified from laboratory-evolved Saccharomyces cerevisiae, Avinash Godara, Maria Alejandra Gomez Rodriguez, Joshua Weatherston, George Peabody, Hung-Jen Wu, and Katy Kao
Effects of Seawater on Carotenoid Production and Lipid Content of Engineered Saccharomyces cerevisiae, Yuqi Guo, Shangxian Xie, Joshua Yuan, and Katy Kao
Optical response of BiFeO3 films subjected to uniaxial strain, Andrew Herklotz, Stefania Rus, Changhee Sohn, Santosh KC, Valentino Cooper, Er-Jia Guo, and Thomas Ward
CgSTE11 mediates cross tolerance to multiple environmental stressors in Candida glabrata, Mian Huang, Jibran Khan, Manpreet Kaur, Julian Daniel Torres Vanega, Orlando Andres Aguilar Patiño, Anand Ramasubramanian, and Katy Kao
Non-conventional Mechanism of Ferroelectric Fatigue via Cation Migration, Anton Ievlev, Santosh KC, Rama Vasudevan, Yunseok Kim, Xiaoli Lu, Marin Alexe, Valentino Cooper, Sergei Kalinin, and Olga Ovchinnikova
Submissions from 2018
Reactive Ion Plasma Modification of Poly(Vinyl‐Alcohol) Increases Primary Endothelial Cell Affinity and Reduces Thrombogenicity, Patrick Jurney, Deirdre Anderson, Grace Pohan, Evelyn Yim, and Monica Hinds
Submissions from 2017
Insights on Osmotic Tolerance Mechanisms in Escherichia coli Gained from an rpoC Mutation, Yuqi Guo, James Winkler, and Katy Kao
Symmetry driven control of optical properties in WO3 films, Andreas Herklotz, Stefania Rus, Santosh KC, Valentino Cooper, Amanda Huon, Er-Jia Guo, and Thomas Ward
Computational Study of MoS2/HfO2 Defective Interfaces for Nanometer-Scale Electronics, Santosh KC, Roberto Longo, Robert Wallace, and Kyeongjae Cho
Magnetic behavior and spin-lattice coupling in cleavable, van der Waals layered CrCl3 crystals, Michael McGuire, Genevieve Clark, Santosh KC, W. Chance, Gerald Jellison, Valentino Cooper, Xiaodong Xu, and Brian Sales
Antiferromagnetism in the van der Waals layered spin-lozenge semiconductor CrTe3, Michael McGuire, V. Ovidiu Garlea, Santosh KC, Valentino Cooper, Jiaqiang Yan, Huibo Cao, and Brian Sales
High temperature magneto-structural transition in van der Waals-layered -MoCl3, Michael McGuire, Jiaqiang Yan, Paula Lampen-Kelley, Andrew May, Valentino Cooper, Lucas Lindsay, Alexander Puretzky, Liangbo Liang, Santosh KC, Ercan Cakmak, Stuart Calder, and Brian Sales
Biotemplating pores with size and shape diversity for Li-oxygen Battery Cathodes, Dahyun Oh, Cagla Ozgit-Akgun, Esin Akca, Leslie Thompson, Loza Tadesse, Ho-Cheol Kim, Gökhan Demirci, and Robert Miller
Sexual recombination and increased mutation rate expedite evolution of Escherichia coli in varied fitness landscapes, George Peabody, Hao Li, and Katy Kao
Submissions from 2016
Imaging right ventricular function to predict outcome in pulmonary arterial hypertension, Alessandro Bellofiore, Melanie Brewis, Rebecca Vanderpool, Naomi Chesler, Martin Johnson, Robert Naeije, and Andrew Peacock
Reduced haemodynamic coupling and exercise are associated with vascular stiffening in pulmonary arterial hypertension, Alessandro Bellofiore, Eric Dinges, Robert Naeije, Hamorabi Mkrdichian, Lauren Beussink-Nelson, Melissa Bailey, Michael Cuttica, Ranya Sweis, James Runo, Jon Keevil, Christopher Francois, Sanjiv Shah, and Naomi Chesler
Electronic properties of MoS2/MoOx interfaces: Implications in Tunnel Field Effect Transistors and Hole Contacts, Santosh KC, Roberto Longo, Rafik Addou, Robert Wallace, and Kyeongjae Cho
Monolayer MoS2 Bandgap Modulation by Dielectric Environments and Tunable Bandgap Transistors, Junga Ryou, Yong-Sung Kim, Santosh KC, and Kyeongjae Cho
Materials Design on the Origin of Gap States in a High-κ/GaAs Interface, Weichao Wang, Cheng Gong, Ka Xiong, Santosh KC, Robert Wallace, and Kyeongjae Cho
Submissions from 2015
What does the time constant of the pulmonary circulation tell us about the progression of right ventricular dysfunction in pulmonary arterial hypertension?, Alessandro Bellofiore, Z. Wang, and Naomi Chesler
Surface oxidation energetics and kinetics on MoS2 monolayer, Santosh KC, Roberto Longo, Robert Wallace, and Kyeongjae Cho
Non-invasive right ventricular efficiency using 4D flow MRI, Alejandro Roldán-Alzate, Scott Grogan, Heidi Kellihan, Alessandro Bellofiore, Naomi Chesler, Oliver Wieben, and Christopher Francois
Submissions from 2014
MoS2 functionalization for ultra-thin atomic layer deposited dielectrics, Angelica Azcatl, Stephen McDonnell, Santosh KC, Xin Peng, Hong Dong, Xiaoye Qin, Rafik Addou, Greg Mordi, Ning Lu, Jiyoung Kim, Moon Kim, Kyeongjae Cho, and Robert Wallace
The Effect of Platelet-Rich Plasma (PRP) on Muscle Contusion Healing in a Rat Model., Demetris Delos, Matthew J. Leineweber, Salma Chaudhury, Saif Alzoobaee, Yingxin Gao, and Scott Alan Rodeo
Electronic properties of InP (001)/HfO2 (001) interface: Band offsets and oxygen dependence, Santosh KC
Averaging improves strain images of the biceps brachii using quasi-static ultrasound elastography, Matthew Leineweber, J Westborn, A Cochran, Y Gao, and J Choi
Increasing Label-Free Stem Cell Sorting Capacity to Reach Transplantation-Scale Throughput, Melinda Simon, Ying Li, Janahan Arulmoli, Lisa McDonnell, Adnan Akil, Jamison Nourse, Abraham Lee, and Lisa Flanagan
Simultaneous Conversion of All Cell Wall Components by Oleaginous Fungus without Chemi-physical Pretreatment, Shangxian Xie, Xin Qin, Yanbing Cheng, Dhrubojyoti Laskar, Weichuan Qiao, Su Sun, Luis Reyes, Xin Wang, Susan Dai, Scott Sattler, Katy Kao, Bin Yang, Xiaoyu Zhang, and Joshua Yuan
Submissions from 2013
Mammalian cells preferentially internalize hydrogel nanodiscs over nanorods and use shape-specific uptake mechanisms, Rachit Agarwal, Vikramjit Singh, Patrick Jurney, Li Shi, S. Sreenivasan, and Krishnendu Roy
Mechanical properties of human amniotic fluid stem cells using nanoindentation, Ashkan Aryaei and Ambalangodage Jayasuriya
Indium diffusion through high-k dielectrics in high-k/InP stacks, H. Dong, W. Cabrera, R. Galatage, Santosh KC, B. Brennan, X. Qin, S. McDonnell, D. Zhernokletov, C. Hinkle, K. Cho, Y. Chabal, and R. Wallace
In-situ study of e-beam Al and Hf metal deposition on native oxide InP (100), H. Dong, Santosh KC, A. Azcatl, W. Cabrera, X. Qin, B. Brennan, D. Zhernokletov, K. Cho, and R. Wallace
In situ study of the role of substrate temperature during atomic layer deposition of HfO2 on InP, H. Dong, Santosh KC, X. Qin, B. Brennan, S. McDonnell, D. Zhernokletov, C. Hinkle, J. Kim, K. Cho, and R. Wallace
EXCEED: Excellence in Your Engineering Education Summer Transition Program, Stacy Gleixner, Katherine Casey, Jared Tuberty, S. Latic, Patricia Backer, and Emily Allen
First principles study on InP (001)-(2 × 4) surface oxidation, Santosh KC, Weichao Wang, Hong Dong, Ka Xiong, Roberto Longo, Robert Wallace, and Kyeongjae Cho
Biologically enhanced cathode design for improved capacity and cycle life for lithium-oxygen batteries, Dahyun Oh, Jifa Qi, Yi-Chun Lu, Yong Zhang, Yang Shao-Horn, and Angela Belcher
Interfacial bonding and electronic structure of HfO2/GaSb interfaces: A first-principles study, Ka Xiong, Wei-Hua Wang, Dmitry Zhernokletov, Santosh KC, Roberto Longo, R. Wallace, and Kyeongjae Cho
Submissions from 2012
Visualizing evolution in real-time method for strain engineering, Luis Reyes, James Winkler, and Katy Kao
Novel On-Demand Droplet Generation for Selective Fluid Sample Extraction, Melinda Simon, Jeffrey Fisher, Melinda Simon, and Abraham Lee
A Laplace pressure based microfluidic trap for passive droplet trapping and controlled release, Melinda Simon, Robert Lin, Jeffrey Fisher, and Abraham Lee
